Publications
Recent Research Articles
- Gaither, L.A. et all. Multiple cyclophilins involved in different cellular pathways mediate HCV replication. Virology, 5 (397) 43-55 (2010) [+]
- Bantscheff, M., Scholten, A., Heck, AJ. Revealing promiscuous drug-target interactions by chemical proteomics. Drug Discovery Today, 14 (21-22), 1021-9 (2009) [+]
- Borawski J. et al. Class III phosphatidylinositol 4-kinase alpha and beta are novel host factor regulators of hepatitis C virus replication. J Virol. 83 (19) 10058-74 (2009) [+]
- Heymans, S. et al. Inflammation as a therapeutic target in heart failure? A scientific statement from the Translational Research Committee of the Heart Failure Association of the European Society of Cardiology. European Journal of Heart Failure 11, 119-129 (2009) [+]
- Winkler, E. et al. Purification, Pharmacological Modulation, and Biochemical Characterization of Interactors of Endogenous Human gamma-Secretase (dagger). Biochemistry 48, 1183-97 (2009) [+]
- Marwick, JA. et al. Oxidative stress modulates theophylline effects on steroid responsiveness. Biochemical and Biophysical Research Communications 377, 797-802 (2008) [+]
- Kruse, U. et al. Chemical and pathway proteomics: Powerful tools for oncology drug discovery and personalized health care. Mol Cell Proteomics 7, 1887-1901 (2008) [+]
- Bantscheff, M. et al. Robust and sensitive iTRAQ quantification on an LTQOrbitrap mass spectrometer. Mol Cell Proteomics 7, 1702-1713 (2008) [+]
Landmark Publications [+]
- Huang, S. et al. Tankyrase inhibition stabilizes axin and antagonizes Wnt signalling. Nature 461, 614-620 (2009) [+]
- Bantscheff, M. et al. Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors. Nature Biotechnology 25, 1035-1044 (2007) [+]
- Gavin, A.C. et al. Proteome survey reveals modularity of the yeast cell machinery. Nature 440, 631-636 (2006) [+]
- Bouwmeester, T. et al. A physical and functional map of the human TNF-α/NF-κB signal transduction pathway. Nature Cell Biology 6, 97-105 (2004) [+]
- Gavin, A.C. et al. Functional Organization of the Yeast Proteome by Systematic Analysis of Protein Complexes. Nature 415, 141-147 (2002) [+]
Cellzome Publications until 2007 [+]
- Bantscheff, M. et al. Quantitative mass spectrometry in proteomics: a critical review. Analytical and Bioanalytical Chemistry 389, 1017-1031 (2007) [+]
- Hopf, C., Bantscheff, M. and Drewes, G. Pathway proteomics and chemical proteomics team up in drug discovery. Neurodegenerative Diseases 4, 270-280 (2007) [+]
- Mallick, P. et al. Computational prediction of proteotypic peptides for quantitative proteomics. Nature Biotechnology 25, 125-131 (2007) [+]
- Ruffner H., Bauer A., Bouwmeester T. Human protein-protein interaction networks and the value for drug discovery. Drug Discovery Today 12 709-716 (2007) [+]
- Angrand, P.O. et al. Transgenic mouse proteomics identifies new 14-3-3 associated proteins involved in cytoskeletal rearrangements and cell signalling. Molecular & Cellular Proteomics 5, 2211-2227 (2006)[+]
- Chen, Y.M. et al. Microtubule affinity-regulating kinase 2 functions downstream of the PAR-3/PAR-6/atypical PKC complex in regulating hippocampal neuronal polarity. Proc. Natl Acad. Sci. USA 103; 8534-8539 (2006) [+]
- Simmons, D. L. What makes a good anti-inflammatory drug target? What makes a good anti-inflammatory drug target? Drug Discovery Today 11, 210-219 (2006) [+]
- Mukherjee, A. et al. Regulation of Notch signalling by non-visual beta-arrestin. Nature Cell Biology 7, 1191-1201 (2005) [+]
- Simmons, D. L., Buckley, C.D. Some new and some not so new anti-inflammatory targets. Immunomodulation and Cancer. Current Opinion in Pharmacology 5, 394-397 (2005) [+]
- Simmons, D. L. Anti-adhesion therapies. Current Opinion in Pharmacology 5,
398-404 (2005) [+]
- Kuster, B., Schirle, M., Mallick, P., Aebersold, R. Innovation: Scoring proteomes with proteotypic peptide probes. Nature Reviews Molecular Cell Biology 6, 577-583 (2005) [+]
- Drewes, G. MARKing tau for tangles and toxicity. Trends in Biochemical Sciences 29, 548-555 (2004) [+]
- Gagneur J. et al. Modular decomposition of protein-protein interaction networks. Genome Biology 5, R57 (2004) [+]
- Aloy, P. et al. Structure-Based Assembly of Protein Complexes in Yeast. Science 303, 2026-2029 (2004) [+]
- Bantscheff M., Dümpelfeld B., Kuster B. Femtomol sensitivity post-digest 18O labeling for relative quantification of differential protein complex composition. Rapid Communications in Mass Spectrometry 18, 869-876 (2004) [+]
- Brajenovic, M. et al. Comprehensive proteomic analysis of human Par protein complexes reveals an interconnected protein network. Journal of Biological Chemistry 279, 12804-12811 (2004) [+]
- Trinczek B. et al. MARK4 is a novel microtubule-associated proteins/microtubule affinity-regulating kinase that binds to the cellular microtubule network and to centrosomes. Journal of Biological Chemistry 279, 5915-5923 (2004) [+]
- Bauer, A., Kuster, B. Affinity Purification - Mass Spectrometry. Power Tools for the Characterization of Protein Complexes. European Journal of Biochemistry 270, 570-578 (2003) [+]
- Brown, D., Superti-Furga, G. Rediscovering the sweet spot in drug discovery. Drug Discovery Today 8, 1067-1077 (2003) [+]
- Drewes G., Nurse P. The protein kinase kin1, the fission yeast orthologue of mammalian MARK/PAR-1, localises to new cell ends after mitosis and is important for bipolar growth. FEBS Letters 554, 45-49 (2003) [+]
- Drewes, G., Bouwmeester, T. Global approaches to protein-protein interactions. Current Opinion in Cell Biology 15, 199-205 (2003) [+]
- Gagneur, J., Jackson, D., Casari, G. Hierarchical analysis of dependency in metabolic networks. Bioinformatics 19, 1027-1034 (2003) [+]
- Gavin. A. C., Superti-Furga, G. Protein complexes and proteome organization from yeast to man. Current Opinion in Chemical Biology 7, 21-27 (2003) [+]
- Puntervoll, P. et al. ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Research 31, 3625-1630 (2003) [+]
- Schirle, M., Heurtier, M.A., Kuster, B. Profiling Core Proteomes of Human Cell Lines by One-dimensional PAGE and Liquid Chromatography-Tandem Mass Spectrometry. Molecular & Cellular Proteomics 2, 1297-305 (2003) [+]
- Aloy, P. et al. A Complex prediction: three-dimensional model of the yeast exosome. EMBO reports 3, 628-635 (2002) [+]
- Grandi, P. et al. 90S Pre-Ribosomes Include the 35S Pre-rRNA, the U3 snoRNP and 40S Subunit Processing Factors but Predominately Lack 60S Synthesis Factors. Molecular Cell 10, 105-115 (2002) [+]
- Bantscheff, M., Dümpelfeld, B., Küster, B. An Improved Two-Step Calibration Method for Matix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectra for Proteomics. Letter to the Editor. Rapid Communications in Mass Spectrometry 16, 1892-1895 (2002). [+]
- Raida, M. Capillary and Nano-LC Coupled with Mass Spectrometry. In: J. Silberring and R. Ekman (Eds.) Mass Spectrometry and Hyphenated Techniques in Neuropeptide Research 109-134 (2002) New York, Wiley [no abstract available]
- Reina, J. et al. Computer-Aided Design of a PDZ Domain to Recognise New Target Sequences. Nature Structural & Molecular Biology 9, 621-627 (2002) [+]
- Rigaut. G. et al. A generic protein purification method for protein complex characterization and proteome exploration. Nature Biotechnology 17, 1030-1032 (1999) [+]
Assessment of Cellzome's data [+]
- Peters E.C., Gray N.S. Chemical proteomics identifies unanticipated targets of clinical kinase inhibitors. ACS Chemical Biology 2, 661-644 (2007) [+]
- White F.M. On the iTRAQ of kinase inhibitors. Nature Biotechnology 25, 994-996 (2007) [+]
- von Mering C. et al. Comparative Assessment of Large-Scale Data Sets of Protein-Protein Interactions. Nature 417, 399-403 (2002) [+]
- Edwards A.M. et al. Bridging structural biology and genomics: assessing protein interaction data with known complexes. Trends in Genetics 18, 529-536 (2002) [+]
- Kemmeren P. et al. Protein Interaction Verification and Functional Annotation by Integrated Analysis of Genome- Scale Data. Molecular Cell 9, 1133-1143 (2002) [+]
- Bader, G.D. and Hogue, C.W. Analyzing yeast protein-protein interaction data obtained from different sources. Nature Biotechnology 20, 991-997 (2002) [+]